Ken, the Power Spark is truly remarkable on SO MANY levels. And the weight saving is there. There's no need for separate battery, as the system is designed for 4.8 to 12 V. You can use a 12 V with a tiny voltage regulator for your radio system if you like, but you don't need 2 battery packs aboard.
However, what you describe can probably be fixed with a plug gap of .015", and a check to make sure you have adequate source coil to flywheel clearance. Also make sure your secondary coil is POSITIVELY grounded to the motor ( they aren't always ). Sometimes a slight tweak on the carb high needle can help.
The Power Spark is tremendous, but I'm not sure you NEED it for a cure.